By Mubasher Ahmed, Genetics ‘15 Viral evolution is an emerging field in biology that has great implications for human health. T7 is a phage virus, meaning it infects bacteria, and is a powerful model system in evolutionary virology. In a recent experiment, a team of biologists sought to understand the degree to which genetic elements engineered into the T7 phage genome affected the phage’s rate of propagation. In this context, the genetic elements are sequences of DNA that are inserted between genes that allow for researchers to manipulate gene regulatory networks. This allows biologists to probe how phenotypes change when gene-gene interactions are perturbed. Previous studies had shown that such genomic elements led to decreased fitness for the virus, but […]
By: Jenny Cade, Biochemistry and Molecular Biology ‘15 In a paper published in Nature Communications on April 15, researchers profiled the gut microbiota of a group of hunter-gatherers in Tanzania known as the Hadza. They compared the results to those of people living in Italy, and found that the two groups have very different species composition. The Hadza don’t only have different kinds of gut microbes than Westerners, but a more diverse collection of microbes as well. The researchers say that this is most likely due to the dramatic difference between hunter-gatherer and Western diets.
By Marisa Sanchez, Molecular and Cellular Biology ‘15 The genomes of male and female mammals differ by one chromosome. The Y chromosome is only present in males, and is responsible for initiating the physiological and morphological differences between the sexes. This has not always been the case though; at one point, the X and Y were identical, and over time the Y chromosome began to differentiate from the X chromosome and shrink in size. The Y chromosome today only has 20 genes, whereas the X chromosome has over 1,000 genes.
By Daniel Friedman, Genetics ’14 For years, ecologists have modeled the biodiversity of natural forests as if they were oceanic islands, adrift in an unlivable sea of humanity. However, research published in April in Nature by C. Mendenhall et al. suggest that this is not the most accurate or predictive way to think about these pockets of nature. By comparing bat diversity on countrysides and oceanic islands, they find that fragmented land ecosystems behave markedly different than their oceanic counterparts. They find that forest “islands” maintain species at higher overall levels of biodiversity than ocean islands, and also gain/lose species in unique patterns. This has relevance to humanity’s actions to support biodiversity on land, and suggests the need for new models, […]
By Marisa Sanchez, Molecular and Cellular Biology ’15 Green tea has been said to have several health benefits including helping prevent certain types of cancer and inflammation. In a new study done by Dr. Beglinger and Dr. Borgwardt at the University of Basel in Switzerland, they have found that green tea extract enhances cognitive functions, particularly the working memory because green tea extract increases the brain’s effective connectivity, the causal influence that one part of the brain exerts on another part.
By Ashley Chang, Genetics ’15 Researchers at the University of Basel in Switzerland have successfully used lab-engineered cartilage for nose reconstruction. This study was conducted on five patients between ages 76 and 88 who had significant nasal damage after skin cancer surgery. One year after the replacement, all of them note significant improvement in the ability to breathe as well as cosmetic appeal, and no patients had significant side effects. This is a groundbreaking study as it opens of the possibility of engineered cartilage replacement in other areas, such as the knee, and of tissue-engineering as a whole.
By Jenny Cade, Biochemistry & Molecular Biology ’15 Eating grass-fed beef and pasture-raised chicken is the eco-friendly thing to do–right? Maybe not, according to a recent paper published in the Proceedings in the National Academy of Science. The study proposes that intensifying livestock production by transitioning from pure grazing to mixed systems–where animals are fed high-energy food like grains–could reduce livestock greenhouse gas emissions by 23% by 2030. Currently, livestock account for 14.5% of all anthropogenic greenhouse gas emissions, so such a reduction would be significant. In contrast, a comment piece that appeared in Nature last month calls for increasing grazing to make livestock systems more sustainable. Of eight strategies that the authors outline to reduce the environmental and economic […]
This is a submission from UC Davis CBS Professor Sean Burgess. It comes from a future publication that relates the human quest to visualize the inner workings of the cell, molecular biology, with the quest to visualize the interior of the mind, art. Title: The Eukaryotic Ribosome Caption: The basic mechanism of ribosomebased protein synthesis is conserved among all domains of life. The ribosome comes in two parts. The small subunit interacts with the mRNA and decodes the interaction with the aminoacyl tRNAs. The large subunit contains the active site of peptidyl transferase. The two subunits together form three pockets for three forms of tRNA. The A site is where the aminoacyl tRNA binds, the P site holds that peptidyl tRNA when the Asite is occupied. The E site contains the deacylated tRNA following peptidyl transferase. The ribosome is a huge conglomeration of RNA and proteins. The RNA appears to do all the heavy lifting for the main catalytic event of protein synthesis. So what came first, the protein or the ribosome? Obtaining the crystal structure of the ribosome was a tour de force effort. The Nobel Prize for solving its structure was awarded in 2009. Top: Willi Baumeister: Mortaruru with Red Overhead (1953), The Art Book, Phaidon Press Limited, 1994. Bottom: The 60S (PDB: 305H) and 40S (PDB: 1S1H) subunits of the eukaryotic ribosome. BenShem et al. (2010) Science, 330 (6008): 12031209. The image was generated by S.M.B. using MacPymol using coordinates from the Protein Databank (http://helixweb.nih.gov/cgibin/pdb). MacPyMOL is product of Schrodinger, LLC. Copyright (C) 20092010.
By: Jack Taylor, Biochemistry and Molecular Biology ’15 Sponsor: Michael Turelli, Ph.D. Ecology and Evolution Many species of arthropods host Wolbachia, maternally transmitted bacteria that often influence host reproduction. This manipulation of host reproduction has contributed to Wolbachia becoming a normally-present infection of many Drosophila simulans. The Y36 isofemale line, a population of Drosophila simulans created from a single female collected in 2010 in Yolo County, produces flies which have an unusual phenotype when reciprocally crossed with uninfected simulans populations denoted U. The cross between Y36 male and U female produces female offspring with significantly lower fecundity than the reciprocal cross (Y36 female with U male). It is possible that this effect is a result of a paternal defect gene […]
By Isra Uz-Zaman, Genetics ’14 Cheating in sports in not a new phenomenon. In the modern era, numerous athletes participate in blood doping by injecting erythropoietin (EPO) into their blood to increase the amount of red blood cells and thus improve their athletic performance. EPO is a protein hormone produced by the kidney which stimulates the production of red blood cells when released into the bloodstream. Increased red blood production increases the amount of oxygen available in the body and boosts an athlete’s performance. Yannis Pitsiladis, a psychologist in Scotland, is at the forefront of developing anti-doping testing based on the genetic fingerprint left by drugs. Conventionally researches developed tests to find the drug, but Pitsiladis has taken another approach. […]